PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17602_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 237aa    MW: 26660.9 Da    PI: 5.2216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17602_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1980129255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+G+r ++ +g+W++eIrdp++    +r++lg+f taeeAa a++ a+k+++g
  RrC17602_p1  80 VYRGIRKRS-WGKWASEIRDPRK---GTRVWLGTFNTAEEAAMAYDVAAKRIRG 129
                  69****888.**********954...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3280138IPR001471AP2/ERF domain
PROSITE profilePS5103223.53880137IPR001471AP2/ERF domain
PfamPF008471.5E-1280129IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2280138IPR016177DNA-binding domain
SMARTSM003801.0E-3680143IPR001471AP2/ERF domain
PRINTSPR003672.5E-118192IPR001471AP2/ERF domain
CDDcd000181.11E-3281139No hitNo description
PRINTSPR003672.5E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MCGGAIISDF VPILTKAKGR KLTAEELWSE LDASAGDYFW GFHPTSNLQS TSQQEVVLKE  60
DAVEKKKGEP PTEKRRRKNV YRGIRKRSWG KWASEIRDPR KGTRVWLGTF NTAEEAAMAY  120
DVAAKRIRGD KAKLNFPDLL LHPSPLTSDD QPPEKKLCVH SQSELTHPNS PVECFGFGSG  180
DEFRNPSYGF ETGYDLKQQI SSLESFLEPD GIMAEQPSQL DESVDMWTID DVISLYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2281137360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278EKRRRKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146062.11e-138PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_013749539.11e-138PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
SwissprotP427361e-120RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078DUI01e-138A0A078DUI0_BRANA; BnaA05g23130D protein
TrEMBLM4E0791e-138M4E079_BRARP; Uncharacterized protein
STRINGBra022176.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-111ethylene-responsive element binding protein